从多个 hdf 文件中提取变量

如何解决从多个 hdf 文件中提取变量

我有这 3 个文件 here。试图堆叠它们并提取一个名为“OzoneTropColumn”的变量。我可以为单个文件提取数据，但无法为多个文件提取数据。

library(raster)
library(ncdf4)
list_col1 <- list.files("E:/TES",pattern = "*.hdf",full.names = TRUE) 
ncin1 <- raster::stack(list_col1,varname = "Data Fields/OzoneTropColumn",ncdf=TRUE)

任何帮助将不胜感激。

谢谢

解决方法

我不知道这是否真的有效，因为我不是 raster 或导入 hdf 文件的专家。但是这段代码确实为我加载了 R 中的三个文件，但仍然给出了一些警告：-

library(raster)
library(ncdf4)
list_col1 <- as.list(list.files("E:/TES",pattern = "*.hdf",full.names = TRUE))
ncin1 <- raster::stack(list_col1,varname = "Data Fields/OzoneTropColumn",ncdf=TRUE)

[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_1 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"
[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_0 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"
[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_1 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"
[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_0 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"
[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_1 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"
[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_0 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"
[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_1 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"
[1] "vobjtovarid4: **** WARNING **** I was asked to get a varid for dimension named Data Fields/phony_dim_0 BUT this dimension HAS NO DIMVAR! Code will probably fail at this point"

但确实告诉我它已经读取了 3 个文件

ncin1[[1]]
class      : RasterLayer 
dimensions : 83,90,7470  (nrow,ncol,ncell)
resolution : 1,1  (x,y)
extent     : 0.5,90.5,0.5,83.5  (xmin,xmax,ymin,ymax)
crs        : NA 
source     : /home/shawn/Downloads/TES/TES-Aura_L3-O3-M2004m09_F01_12.hdf 
names      : Data.Fields.OzoneTropColumn.1 
zvar       : Data Fields/OzoneTropColumn

ncin1[[2]]
class      : RasterLayer 
dimensions : 83,ymax)
crs        : NA 
source     : /home/shawn/Downloads/TES/TES-Aura_L3-O3-M2004m10_F01_12.hdf 
names      : Data.Fields.OzoneTropColumn.2 
zvar       : Data Fields/OzoneTropColumn

ncin1[[3]]
class      : RasterLayer 
dimensions : 83,ymax)
crs        : NA 
source     : /home/shawn/Downloads/TES/TES-Aura_L3-O3-M2004m11_F01_12.hdf 
names      : Data.Fields.OzoneTropColumn.3 
zvar       : Data Fields/OzoneTropColumn

Robert 发布的脚本运行良好，唯一的区别是使用 as.list 和不使用 as.list]1]1。我在没有as.list的情况下使用之前尝试过。由于未知原因，提取的数据丢失了其地理参考。所以必须在光栅堆栈后给出范围和投影。谢谢罗伯特。