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ipython 和 jupyter 的 conda 环境路径不同

如何解决ipython 和 jupyter 的 conda 环境路径不同

我正在使用 conda 环境管理器并为新项目创建了一个新环境 borehole。但是,jupyter lab 的路径与 ipython 交互式终端的路径不同。这是 jupyter lab 路径:

enter image description here

为了确认这一点,我们还可以看到 jupyterlab 扩展来自 env 钻孔目录:

enter image description here

这是 ipython 路径:

enter image description here

在此 jupyter lab 情况下,所有路径都链接到名为 faroe 的不同环境。但是,在 ipython 的情况下,它们链接到正确的环境 borehole。更重要的是,如果我们查看命令的路径,它们都链接到正确的路径 borehole:

enter image description here

这里的最终问题是环境中安装的包无法被 jupyter notebook 引用,因为 jupyter notebook 的路径与 jupyter notebook 服务器所在的环境不同。

以下是需求文件

# packages in environment at /home/john/anaconda3/envs/borehole:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       1_gnu    conda-forge
_py-xgboost-mutex         2.0                       cpu_0    conda-forge
alsa-lib                  1.2.3                h516909a_0    conda-forge
anyio                     3.2.0            py38h578d9bd_0    conda-forge
argon2-cffi               20.1.0           py38h497a2fe_2    conda-forge
async_generator           1.10                       py_0    conda-forge
attrs                     21.2.0             pyhd8ed1ab_0    conda-forge
babel                     2.9.1              pyh44b312d_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
bleach                    3.3.0              pyh44b312d_0    conda-forge
brotlipy                  0.7.0           py38h497a2fe_1001    conda-forge
c-ares                    1.17.1               h7f98852_1    conda-forge
ca-certificates           2021.5.30            ha878542_0    conda-forge
cartopy                   0.19.0.post1     py38hc9c980b_0    conda-forge
certifi                   2021.5.30        py38h578d9bd_0    conda-forge
cffi                      1.14.5           py38ha65f79e_0    conda-forge
chardet                   4.0.0            py38h578d9bd_1    conda-forge
conda                     4.10.1           py38h578d9bd_0    conda-forge
conda-package-handling    1.7.3            py38h497a2fe_0    conda-forge
cryptography              3.4.7            py38ha5dfef3_0    conda-forge
cycler                    0.10.0                     py_2    conda-forge
dbus                      1.13.6               h48d8840_2    conda-forge
decorator                 5.0.9              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
entrypoints               0.3             pyhd8ed1ab_1003    conda-forge
expat                     2.4.1                h9c3ff4c_0    conda-forge
fontconfig                2.13.1            hba837de_1005    conda-forge
freetype                  2.10.4               h0708190_1    conda-forge
future                    0.18.2           py38h578d9bd_3    conda-forge
geos                      3.9.1                h9c3ff4c_2    conda-forge
gettext                   0.19.8.1          h0b5b191_1005    conda-forge
glib                      2.68.3               h9c3ff4c_0    conda-forge
glib-tools                2.68.3               h9c3ff4c_0    conda-forge
greenlet                  1.1.0            py38h709712a_0    conda-forge
gst-plugins-base          1.18.4               hf529b03_2    conda-forge
gstreamer                 1.18.4               h76c114f_2    conda-forge
icu                       68.1                 h58526e2_0    conda-forge
idna                      2.10               pyh9f0ad1d_0    conda-forge
importlib-Metadata        4.5.0            py38h578d9bd_0    conda-forge
ipykernel                 5.5.5            py38hd0cf306_0    conda-forge
ipython                   7.24.1           py38hd0cf306_0    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                7.6.3              pyhd3deb0d_0    conda-forge
jbig                      2.1               h7f98852_2003    conda-forge
jedi                      0.18.0           py38h578d9bd_2    conda-forge
jinja2                    3.0.1              pyhd8ed1ab_0    conda-forge
joblib                    1.0.1              pyhd8ed1ab_0    conda-forge
jpeg                      9d                   h36c2ea0_0    conda-forge
json5                     0.9.5              pyh9f0ad1d_0    conda-forge
jsonschema                3.2.0              pyhd8ed1ab_3    conda-forge
jupyter                   1.0.0            py38h578d9bd_6    conda-forge
jupyter_client            6.1.12             pyhd8ed1ab_0    conda-forge
jupyter_console           6.4.0              pyhd8ed1ab_0    conda-forge
jupyter_core              4.7.1            py38h578d9bd_0    conda-forge
jupyter_server            1.8.0              pyhd8ed1ab_0    conda-forge
jupyterlab                3.0.16             pyhd8ed1ab_0    conda-forge
jupyterlab_pygments       0.1.2              pyh9f0ad1d_0    conda-forge
jupyterlab_server         2.6.0              pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        1.0.0              pyhd8ed1ab_1    conda-forge
kiwisolver                1.3.1            py38h1fd1430_1    conda-forge
krb5                      1.19.1               hcc1bbae_0    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.35.1               hea4e1c9_2    conda-forge
lerc                      2.2.1                h9c3ff4c_0    conda-forge
libblas                   3.9.0                9_openblas    conda-forge
libcblas                  3.9.0                9_openblas    conda-forge
libclang                  11.1.0          default_ha53f305_1    conda-forge
libcurl                   7.77.0               h2574ce0_0    conda-forge
libdeflate                1.7                  h7f98852_5    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libevent                  2.1.10               hcdb4288_3    conda-forge
libffi                    3.3                  h58526e2_2    conda-forge
libgcc-ng                 9.3.0               h2828fa1_19    conda-forge
libgfortran-ng            9.3.0               hff62375_19    conda-forge
libgfortran5              9.3.0               hff62375_19    conda-forge
libglib                   2.68.3               h3e27bee_0    conda-forge
libgomp                   9.3.0               h2828fa1_19    conda-forge
libiconv                  1.16                 h516909a_0    conda-forge
liblapack                 3.9.0                9_openblas    conda-forge
libllvm11                 11.1.0               hf817b99_2    conda-forge
libnghttp2                1.43.0               h812cca2_0    conda-forge
libogg                    1.3.4                h7f98852_1    conda-forge
libopenblas               0.3.15          pthreads_h8fe5266_1    conda-forge
libopus                   1.3.1                h7f98852_1    conda-forge
libpng                    1.6.37               h21135ba_2    conda-forge
libpq                     13.3                 hd57d9b9_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libssh2                   1.9.0                ha56f1ee_6    conda-forge
libstdcxx-ng              9.3.0               h6de172a_19    conda-forge
libtiff                   4.3.0                hf544144_1    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libvorbis                 1.3.7                h9c3ff4c_0    conda-forge
libwebp-base              1.2.0                h7f98852_2    conda-forge
libxcb                    1.13              h7f98852_1003    conda-forge
libxgboost                1.4.0                h9c3ff4c_0    conda-forge
libxkbcommon              1.0.3                he3ba5ed_0    conda-forge
libxml2                   2.9.12               h72842e0_0    conda-forge
libxslt                   1.1.33               h15afd5d_2    conda-forge
lxml                      4.6.3            py38hf1fe3a4_0    conda-forge
lz4-c                     1.9.3                h9c3ff4c_0    conda-forge
markupsafe                2.0.1            py38h497a2fe_0    conda-forge
matplotlib-base           3.4.2            py38hcc49a3a_0    conda-forge
matplotlib-inline         0.1.2              pyhd8ed1ab_2    conda-forge
mistune                   0.8.4           py38h497a2fe_1003    conda-forge
MysqL-common              8.0.25               ha770c72_2    conda-forge
MysqL-libs                8.0.25               hfa10184_2    conda-forge
nbclassic                 0.3.1              pyhd8ed1ab_1    conda-forge
nbclient                  0.5.3              pyhd8ed1ab_0    conda-forge
nbconvert                 6.0.7            py38h578d9bd_3    conda-forge
nbformat                  5.1.3              pyhd8ed1ab_0    conda-forge
ncurses                   6.2                  h58526e2_4    conda-forge
nest-asyncio              1.5.1              pyhd8ed1ab_0    conda-forge
notebook                  6.4.0              pyha770c72_0    conda-forge
nspr                      4.30                 h9c3ff4c_0    conda-forge
nss                       3.67                 hb5efdd6_0    conda-forge
numpy                     1.20.3           py38h9894fe3_1    conda-forge
obspy                     1.2.2            py38h5c078b8_1    conda-forge
olefile                   0.46               pyh9f0ad1d_1    conda-forge
openjpeg                  2.4.0                hb52868f_1    conda-forge
openssl                   1.1.1k               h7f98852_0    conda-forge
packaging                 20.9               pyh44b312d_0    conda-forge
pandoc                    2.14.0.2             h7f98852_0    conda-forge
pandocfilters             1.4.2                      py_1    conda-forge
parso                     0.8.2              pyhd8ed1ab_0    conda-forge
pcre                      8.45                 h9c3ff4c_0    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    8.2.0            py38ha0e1e83_1    conda-forge
pip                       21.1.2             pyhd8ed1ab_0    conda-forge
proj                      7.2.0                h277dcde_2    conda-forge
prometheus_client         0.11.0             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.19             pyha770c72_0    conda-forge
prompt_toolkit            3.0.19               hd8ed1ab_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
py-xgboost                1.4.0            py38h578d9bd_0    conda-forge
pycosat                   0.6.3           py38h497a2fe_1006    conda-forge
pycparser                 2.20               pyh9f0ad1d_2    conda-forge
pygments                  2.9.0              pyhd8ed1ab_0    conda-forge
pyopenssl                 20.0.1             pyhd8ed1ab_0    conda-forge
pyparsing                 2.4.7              pyh9f0ad1d_0    conda-forge
pyqt                      5.12.3           py38h578d9bd_7    conda-forge
pyqt-impl                 5.12.3           py38h7400c14_7    conda-forge
pyqt5-sip                 4.19.18          py38h709712a_7    conda-forge
pyqtchart                 5.12             py38h7400c14_7    conda-forge
pyqtwebengine             5.12.1           py38h7400c14_7    conda-forge
pyrsistent                0.17.3           py38h497a2fe_2    conda-forge
pyshp                     2.1.3              pyh44b312d_0    conda-forge
pysocks                   1.7.1            py38h578d9bd_3    conda-forge
python                    3.8.10          h49503c6_1_cpython    conda-forge
python-dateutil           2.8.1                      py_0    conda-forge
python_abi                3.8                      1_cp38    conda-forge
pytz                      2021.1             pyhd8ed1ab_0    conda-forge
pyzmq                     22.1.0           py38h2035c66_0    conda-forge
qt                        5.12.9               hda022c4_4    conda-forge
qtconsole                 5.1.0              pyhd8ed1ab_0    conda-forge
qtpy                      1.9.0                      py_0    conda-forge
readline                  8.1                  h46c0cb4_0    conda-forge
requests                  2.25.1             pyhd3deb0d_0    conda-forge
ruamel_yaml               0.15.80         py38h497a2fe_1004    conda-forge
scikit-learn              0.24.2           py38hdc147b9_0    conda-forge
scipy                     1.6.3            py38h7b17777_0    conda-forge
send2trash                1.7.1              pyhd8ed1ab_0    conda-forge
setuptools                49.6.0           py38h578d9bd_3    conda-forge
shapely                   1.7.1            py38haeee4fe_5    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
sniffio                   1.2.0            py38h578d9bd_1    conda-forge
sqlalchemy                1.4.18           py38h497a2fe_0    conda-forge
sqlite                    3.36.0               h9cd32fc_0    conda-forge
terminado                 0.10.1           py38h578d9bd_0    conda-forge
testpath                  0.5.0              pyhd8ed1ab_0    conda-forge
threadpoolctl             2.1.0              pyh5ca1d4c_0    conda-forge
tk                        8.6.10               h21135ba_1    conda-forge
tornado                   6.1              py38h497a2fe_1    conda-forge
tqdm                      4.61.1             pyhd8ed1ab_0    conda-forge
traitlets                 5.0.5                      py_0    conda-forge
urllib3                   1.26.5             pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
websocket-client          0.57.0           py38h578d9bd_4    conda-forge
wheel                     0.36.2             pyhd3deb0d_0    conda-forge
widgetsnbextension        3.5.1            py38h578d9bd_4    conda-forge
xgboost                   1.4.0            py38h578d9bd_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xz                        5.2.5                h516909a_1    conda-forge
yaml                      0.2.5                h516909a_0    conda-forge
zeromq                    4.3.4                h9c3ff4c_0    conda-forge
zipp                      3.4.1              pyhd8ed1ab_0    conda-forge
zlib                      1.2.11            h516909a_1010    conda-forge
zstd                      1.5.0                ha95c52a_0    conda-forge

解决方法

解决方案是安装 nb_conda_kernels,然后将所有内核提供给 jupyter 实验室。

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