如何解决需要数字/复矩阵/向量参数
所以我有一个大数据集，我已经导入和拆分。我已确保附加所有内容并尝试运行代码以确定使用 AIC 的断点数量。
rm(list=ls())
library(Matching)
library(segmented)
dinosaurs=read.csv("C:/Users/user/Desktop/NEW PLOTS FOR DINOS/centrum_input_fin.csv")
attach(dinosaurs)
names(dinosaurs)
dino_names <- names(dinosaurs)
#NEED TO EXPORT FILES (EXPORT THE ALL_DATA_PLUS_SORTED OUT)
all_data_plus_sorted<-NULL
for(j in 1:length(dino_names))
{
with_gaps<-eval(parse(text = dino_names[j]))
gaps <- which(is.na(with_gaps))
non_gaps <-which(1:length(with_gaps) %in%gaps==FALSE)
sorted_without_gaps <- sort(with_gaps[!is.na(with_gaps)],decreasing=TRUE)
ordered_with_gaps<-rep(NA,length(with_gaps))
for(k in 1:length(non_gaps))
{
ordered_with_gaps[non_gaps[k]] <- sorted_without_gaps[k]
}
to_export<-cbind(with_gaps,ordered_with_gaps)
colnames(to_export)<-c(paste(dino_names[j],"_actual_with_gaps",sep=""),paste(dino_names[j],"_ordered_with_gaps",sep=""))
all_data_plus_sorted<- cbind(all_data_plus_sorted,to_export)
}
all_data_plus_sorted
attach(as.data.frame(all_data_plus_sorted))
print(dinosaurs)
detach(as.data.frame(all_data_plus_sorted))
detach(dinosaurs)
#split species
Dyoplosaurus_acutosquameus_ROM734 <- Dyoplosaurus_acutosquameus_ROM734[!is.na(Dyoplosaurus_acutosquameus_ROM734)]
Staurikosaurus_pricei <- Staurikosaurus_pricei[!is.na(Staurikosaurus_pricei)]
Opistocoelocaudia_skarzynskii <- Opistocoelocaudia_skarzynskii[!is.na(Opistocoelocaudia_skarzynskii)]
Stegosaurus_stenops._NHMUKPVR36730 <- Stegosaurus_stenops._NHMUKPVR36730[!is.na(Stegosaurus_stenops._NHMUKPVR36730)]
Giraffatitan_brancai <- Giraffatitan_brancai[!is.na(Giraffatitan_brancai)]
Camptosaurus <- Camptosaurus[!is.na(Camptosaurus)]
Camptosaurus_prestwichii <- Camptosaurus_prestwichii[!is.na(Camptosaurus_prestwichii)]
A_greppini <- A_greppini[!is.na(A_greppini)]
Astrophocaudia_slaughteri_SMU61732 <- Astrophocaudia_slaughteri_SMU61732[!is.na(Astrophocaudia_slaughteri_SMU61732)]
Tastavinsaurus_sanzi_gen_MPZ999 <- Tastavinsaurus_sanzi_gen_MPZ999[!is.na(Tastavinsaurus_sanzi_gen_MPZ999)]
MOZ_Pv1221 <- MOZ_Pv1221[!is.na(MOZ_Pv1221)]
Mamenchisaurus <- Mamenchisaurus[!is.na(Mamenchisaurus)]
Bromtosaurus_CMNo3018 <- Bromtosaurus_CMNo3018[!is.na(Bromtosaurus_CMNo3018)]
Lufengosaurus_Hueni <- Lufengosaurus_Hueni[!is.na(Lufengosaurus_Hueni)]
Mamenchisaurus_hochuanensi <- Mamenchisaurus_hochuanensi[!is.na(Mamenchisaurus_hochuanensi)]
Spinosaurus_FSACKK11888 <- Spinosaurus_FSACKK11888[!is.na(Spinosaurus_FSACKK11888)]
Buitreraptor_MPCNPV370 <- Buitreraptor_MPCNPV370[!is.na(Buitreraptor_MPCNPV370)]
Buitreraptor_MPCA245 <- Buitreraptor_MPCA245[!is.na(Buitreraptor_MPCA245)]
Huabeisaurus_allocotus_HBV20001 <- Huabeisaurus_allocotus_HBV20001[!is.na(Huabeisaurus_allocotus_HBV20001)]
Tethyshadros_insularis_SC57021 <- Tethyshadros_insularis_SC57021[!is.na(Tethyshadros_insularis_SC57021)]
Compsognathus_longipes_CNJ79 <- Compsognathus_longipes_CNJ79[!is.na(Compsognathus_longipes_CNJ79)]
Archaeopteryx12 <- Archaeopteryx12[!is.na(Archaeopteryx12)]
Sinosauropteryx_NIGP127586 <- Sinosauropteryx_NIGP127586[!is.na(Sinosauropteryx_NIGP127586)]
Sinosauropteryx_NIGP_127587 <- Sinosauropteryx_NIGP_127587[!is.na(Sinosauropteryx_NIGP_127587)]
Tetonosaurus_tilletti_AMNH3040 <- Tetonosaurus_tilletti_AMNH3040[!is.na(Tetonosaurus_tilletti_AMNH3040)]
Bambiraptor_feinbergi_FIP001 <- Bambiraptor_feinbergi_FIP001[!is.na(Bambiraptor_feinbergi_FIP001)]
Seimosaurus.halli_NMMNH3690 <- Seimosaurus.halli_NMMNH3690[!is.na(Seimosaurus.halli_NMMNH3690)]
Diluvicursor_pickeringi_NMVP221080 <- Diluvicursor_pickeringi_NMVP221080[!is.na(Diluvicursor_pickeringi_NMVP221080)]
Zhejiungosuurus_lishuiensis_ZMNHM8718 <- Zhejiungosuurus_lishuiensis_ZMNHM8718[!is.na(Zhejiungosuurus_lishuiensis_ZMNHM8718)]
Tianyulong_confuciusi_STMN.263 <- Tianyulong_confuciusi_STMN.263[!is.na(Tianyulong_confuciusi_STMN.263)]
Lusotitan_atalaiensis <- Lusotitan_atalaiensis[!is.na(Lusotitan_atalaiensis)]
Nemegtonykus_citus_MPCD100203 <- Nemegtonykus_citus_MPCD100203[!is.na(Nemegtonykus_citus_MPCD100203)]
Elaphrosaurus_bambergi_MBR4960 <- Elaphrosaurus_bambergi_MBR4960[!is.na(Elaphrosaurus_bambergi_MBR4960)]
Nomingia_gobiensis_GIN100119 <- Nomingia_gobiensis_GIN100119[!is.na(Nomingia_gobiensis_GIN100119)]
Nomingia_gobiensis_MPCD100119 <- Nomingia_gobiensis_MPCD100119[!is.na(Nomingia_gobiensis_MPCD100119)]
Chirostenotes_pergracilis <- Chirostenotes_pergracilis[!is.na(Chirostenotes_pergracilis)]
Seismosaurus_hallorum_NMMNHP3690 <- Seismosaurus_hallorum_NMMNHP3690[!is.na(Seismosaurus_hallorum_NMMNHP3690)]
Heterodontosaurus_tucki_SAMPKK1332 <- Heterodontosaurus_tucki_SAMPKK1332[!is.na(Heterodontosaurus_tucki_SAMPKK1332)]
Jianianhualong_tengi_DLXH1218 <- Jianianhualong_tengi_DLXH1218[!is.na(Jianianhualong_tengi_DLXH1218)]
Yinlong_downsi_IVPPV18685 <- Yinlong_downsi_IVPPV18685[!is.na(Yinlong_downsi_IVPPV18685)]
Neimongosaurus_yangi_LHV0001 <- Neimongosaurus_yangi_LHV0001[!is.na(Neimongosaurus_yangi_LHV0001)]
Magnapaulia_laticaudus_LACM17715 <- Magnapaulia_laticaudus_LACM17715[!is.na(Magnapaulia_laticaudus_LACM17715)]
Ouranosaurus_nigeriensis <- Ouranosaurus_nigeriensis[!is.na(Ouranosaurus_nigeriensis)]
Dreadnoughtus_schrani_MPMPV1156 <- Dreadnoughtus_schrani_MPMPV1156[!is.na(Dreadnoughtus_schrani_MPMPV1156)]
Pectodens_zhenyuensis_IVPPV18578 <- Pectodens_zhenyuensis_IVPPV18578[!is.na(Pectodens_zhenyuensis_IVPPV18578)]
Dilophosaurus_wetherilli <- Dilophosaurus_wetherilli[!is.na(Dilophosaurus_wetherilli)]
Gobihadros_mongoliensis_MPCD100746 <- Gobihadros_mongoliensis_MPCD100746[!is.na(Gobihadros_mongoliensis_MPCD100746)]
Gobihadros_mongoliensis_MPCD100755 <- Gobihadros_mongoliensis_MPCD100755[!is.na(Gobihadros_mongoliensis_MPCD100755)]
Auroraceratops_rugosus_GJ07913 <- Auroraceratops_rugosus_GJ07913[!is.na(Auroraceratops_rugosus_GJ07913)]
Patagotitan_mayorum_MPEFPV <- Patagotitan_mayorum_MPEFPV[!is.na(Patagotitan_mayorum_MPEFPV)]
Eoraptor_lunensi_PVSJ512 <- Eoraptor_lunensi_PVSJ512[!is.na(Eoraptor_lunensi_PVSJ512)]
Corythosaurus_casuarius <- Corythosaurus_casuarius[!is.na(Corythosaurus_casuarius)]
Caihong._Juji_PMoLB00175 <- Caihong._Juji_PMoLB00175[!is.na(Caihong._Juji_PMoLB00175)]
Eosinopteryx_brevipenna_YFGPT5197 <- Eosinopteryx_brevipenna_YFGPT5197[!is.na(Eosinopteryx_brevipenna_YFGPT5197)]
Rahonavis_ostromi_UA8656 <- Rahonavis_ostromi_UA8656[!is.na(Rahonavis_ostromi_UA8656)]
Changyuraptor_yangi_HGB016 <- Changyuraptor_yangi_HGB016[!is.na(Changyuraptor_yangi_HGB016)]
Herrerasaurus_ischigualastensis_PVL2566 <- Herrerasaurus_ischigualastensis_PVL2566[!is.na(Herrerasaurus_ischigualastensis_PVL2566)]
Herrerasaurus_ischigualastensis_UNSJ53 <- Herrerasaurus_ischigualastensis_UNSJ53[!is.na(Herrerasaurus_ischigualastensis_UNSJ53)]
Ischioceratops_zhuchengensis <- Ischioceratops_zhuchengensis[!is.na(Ischioceratops_zhuchengensis)]
Koreaceratops_hwaseongensis <- Koreaceratops_hwaseongensis[!is.na(Koreaceratops_hwaseongensis)]
# CHOOSE SAMPLE TO ANALYSE
#_________________________________________________________________________________________________
# choose sample
name_to_test <- "Koreaceratops_hwaseongensis"
y_val <- eval(parse(text = paste(name_to_test,sep="")))
x_val<-1:length(y_val)
# USE AIC TO DECIDE HOW MANY BREAKS TO USE
#_________________________________________________________________________________________________
# extract AIC for models with 1-3 breakpoints
my_max_it=10
all_mods<-NULL
for(h in 1:4)
{
mod1<-segmented(lm(y_val~x_val),seg.Z=~x_val,psi=NA,control=seg.control(K=h,quant=TRUE,it.max=my_max_it),model=TRUE,nboot=50)
all_mods<-rbind(all_mods,c(h,extractAIC(mod1)[2]))
}
all_mods
my_K<-subset(all_mods,all_mods[,2]==min(all_mods[,2]))[1]
当我运行代码的最后一部分时，我收到错误错误
crossprod(x,y) :
requires numeric/complex matrix/vector arguments
不太清楚为什么因为我把它放在一个数据框中，是因为我导入的文件不正确吗？不知道如何解决。
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