如何解决是什么使点图在geom_point的另一个图之上?以及如何改变呢?
是什么使值点图重叠并在ggtern图上的另一个图之上?我该如何更改? 我想将我选择的彩色观测值绘制在黑色观测值的上方。 (根据我的数据,我有1400个观测值,即使点尺寸较小,这种情况仍然会发生)
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我尝试将颜色更改为“白色” obs <- c("Gene1","Gene2","Gene3","Gene4","Gene5","Gene6")
func1 <- c("A","B","C","D","A")
func2 <- c("A1","B1","C1","D1","C2","A2")
Cond1 <- c(0.007623561,0.004639893,0.000994121,0.017494429,0.000366445,0.006663334)
Cond2 <- c(0.011299941,0.009994388,0.001012428,0.013695669,0.000299771,0.010287904)
Cond3 <- c(0.005055458,0.016826251,0.001311254,0.016115009,0.000242897,0.004583889)
df <- data.frame(obs,func1,func2,Cond1,Cond2,Cond3)
col<-rep("black",length(unique(df$func1)))
names(col) <- unique(df$func1)
col[which(names(col)=="A")] <- 'red'
col[which(names(col)=="D")] <- 'blue'
library(ggtern)
g <- ggtern(data=df,aes(x=Cond1,y=Cond2,z=Cond3)) +
theme_bw() +
geom_point(aes(fill=func1),shape=21,size = 20,colour="black") +
scale_fill_manual(values=col) +
labs(x="Cond1",y="Cond2",z="Cond3") +
scale_T_continuous(breaks=unique(df$x))+
scale_L_continuous(breaks=unique(df$y))+
scale_R_continuous(breaks=unique(df$z))
print(g)
或者另一个选择是将黑点变成白色/透明?在col<-rep("white",length(unique(df$func1)))
中?
解决方法
例如,使“ B”和“ C”透明可能会解决您的问题,例如
library(tidyverse)
obs <- c("Gene1","Gene2","Gene3","Gene4","Gene5","Gene6")
func1 <- c("A","B","C","D","A")
func2 <- c("A1","B1","C1","D1","C2","A2")
Cond1 <- c(0.007623561,0.004639893,0.000994121,0.017494429,0.000366445,0.006663334)
Cond2 <- c(0.011299941,0.009994388,0.001012428,0.013695669,0.000299771,0.010287904)
Cond3 <- c(0.005055458,0.016826251,0.001311254,0.016115009,0.000242897,0.004583889)
df <- data.frame(obs,func1,func2,Cond1,Cond2,Cond3)
col<-rep("black",length(unique(df$func1)))
names(col) <- unique(df$func1)
col[which(names(col)=="A")] <- 'red'
col[which(names(col)=="D")] <- 'blue'
col[which(names(col)=="B" | names(col)=="C")] <- 'transparent'
#install.packages("ggtern")
library(ggtern)
g <- ggtern(data=df,aes(x=Cond1,y=Cond2,z=Cond3)) +
theme_bw() +
geom_point(aes(fill=func1),shape=21,size = 20,colour="black") +
scale_fill_manual(values=col) +
labs(x="Cond1",y="Cond2",z="Cond3") +
scale_T_continuous(breaks=unique(df$x))+
scale_L_continuous(breaks=unique(df$y))+
scale_R_continuous(breaks=unique(df$z))
print(g)
library(tidyverse)
obs <- c("Gene1",length(unique(df$func1)))
names(col) <- unique(df$func1)
col[which(names(col)=="A")] <- 'red'
col[which(names(col)=="D")] <- 'blue'
#install.packages("ggtern")
library(ggtern)
library(tidyverse)
g <- ggtern(data=df,z=Cond3)) +
theme_bw() +
geom_point(data = subset(df,!(func1 %in% c("A","D"))),aes(fill=func1),colour="black") +
geom_point(data = subset(df,func1 %in% c("A","D")),z="Cond3") +
scale_T_continuous(breaks=unique(df$x))+
scale_L_continuous(breaks=unique(df$y))+
scale_R_continuous(breaks=unique(df$z))
print(g)
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